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The C++ compilation were usually tested with several compiler (VC++, g++, clang...) targeting several OSes (GNU/Linux, macOS, Cygwin...), and using the default options (no additional flags). Particular care is taken to avoid any warning. However, the compilation during installation is made by node(-pre)-gyp, and it seems that it passes some extraneous flags to the compiler, hence the warnings.
... SYS error : csdbns.cpp(64)error when launching an Atlas toolkit based application?
The application tries to launch a daemon (see insight overview), but fails because a previous launched daemon was not killed properly, so the port it wants to listen to is not available. This happens often with Cygwin, as it does not properly transmit signals (CTRL-C, for examples) to Windows programs. You have to kill it manually: its a node process.
The latest version of Electron does not work properly under some GNU/Linux testing platform, but the beta does.
To develop the PHP binding of the Atlas toolkit, we had to entirely recompile PHP. There are numerous compilation flags, and we took the simplest ones to have a working PHP binding as soon as possible. This implied to use the CLI mono-threaded of PHP. See PHP insight for more details.